PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla018555
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family TCP
Protein Properties Length: 209aa    MW: 23699.4 Da    PI: 9.5856
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla018555genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP85.11.7e-2640124383
        TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt....ssssaseceaesssssas 83 
                g+kdrhsk++T +g+RdRR+Rls+++a++++dLq++LG+ ++sk i+WL+     +i++l+ +    +++++ +  ++ss    +
  Cla018555  40 GGKDRHSKVCTIKGLRDRRIRLSVPTAIQLYDLQNKLGLSQPSKVIDWLIDVTRFEIDKLPPLhfpkDFDPNASILHHSSLLFPQ 124
                78*************************************************************4444333332223333333333 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036349.9E-2541116IPR005333Transcription factor, TCP
PROSITE profilePS5136926.0034199IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MISKLKEEGV RDEAKQMEGK RKKAFLRGNP RIFRVSPLFG GKDRHSKVCT IKGLRDRRIR  60
LSVPTAIQLY DLQNKLGLSQ PSKVIDWLID VTRFEIDKLP PLHFPKDFDP NASILHHSSL  120
LFPQIPHFDI ADAAVKAKNE ETDHRLLLHK LSSLSALQVQ TNAINGNCCH FEPPSFPFPL  180
MDQINPVSFS FCPLTMPSEV SSYFPNGIN
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819321e-114LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
GenBankLN7132661e-114LN713266.1 Cucumis melo genomic chromosome, chr_12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008445912.15e-86PREDICTED: transcription factor TCP5
RefseqXP_011660343.15e-86PREDICTED: transcription factor TCP5
TrEMBLA0A0A0LTI35e-86A0A0A0LTI3_CUCSA; Uncharacterized protein
STRINGGLYMA06G22240.11e-41(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93234119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.16e-41TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5